Tools & Software
Computational tools and experimental methods built by Biocodecs for the RNA biology community.
Our software
Tools we build, free to use for academic and non-profit purposes. Some are public on GitHub; each has its own page with usage details.
INDEGRA
Integrated RNA degradation analysis from sequencing data
FracFixR / FracFixD
Compositional statistics for fractionated RNA-seq
Protocols & methods
Experimental and analytical methods developed and used in the lab. Some carry an open repository you can read and reuse.
TCP-seq / eTCP-seq
Ribosome profiling at single-nucleotide resolution
dirCLIP
Direct CLIP-seq protocol and analysis
Our collaborative tools
Built with our collaborators, who host the code and binaries; we link you to their sources.
CHEUI
Collaboratorm6A and m5C detection from nanopore direct RNA-seq
RISER
CollaboratorReal-time RNA class enrichment during nanopore sequencing
R2DTool
CollaboratorGenomic annotation of transcriptome-mapped features
Segmentor3IsBack
CollaboratorFast change-point segmentation for sequences